Zeus:Basics: Różnice pomiędzy wersjami
Z Komputery Dużej Mocy w ACK CYFRONET AGH
(Utworzył nową stronę „__NOTITLE__ == Name of accessing machine == <code> zeus.cyfronet.pl </code> or '''ui.cyfronet.pl''' (possible also combinations of Cyfronet domains: '''zeus.cyf-...”) |
|||
| (Nie pokazano 4 wersji utworzonych przez 2 użytkowników) | |||
| Linia 1: | Linia 1: | ||
__NOTITLE__ | __NOTITLE__ | ||
| − | == Name of | + | == Name of access machine == |
<code> | <code> | ||
| Linia 12: | Linia 12: | ||
{| class="wikitable" style="text-align:center;" | {| class="wikitable" style="text-align:center;" | ||
| − | ! Location !! Limit !! Purpose !! | + | ! Location !! Limit !! Purpose !! Type !! Backup<br/> copy !! '''Possibility of intense<br/> write and/or read operations''' !! Notes |
|- | |- | ||
| − | | | + | |$HOME || 7GB || [[Basics#Home_directories|user's home directory]] || NFS || yes || no || |
|- | |- | ||
| − | | | + | |$STORAGE || 100GB || [[Basics#Data_storage|user's data storage]] || GPFS || no || no || |
|- | |- | ||
| − | | | + | |$SCRATCH || no limit || [[Basics#Temporary_storage|space for temporary files of tasks]] || Lustre || no || yes || data older than '''30 days'''<br/> will be removed automatically |
|- | |- | ||
| − | | $PLG_GROUPS_SHARED/group_name<br/>or $PLG_GROUPS_STORAGE/group_name || | + | | $PLG_GROUPS_SHARED/group_name<br/>or $PLG_GROUPS_STORAGE/group_name || sum of grants || space for groups directories (PL-Grid) || Lustre || no || no || |
|} | |} | ||
| Linia 65: | Linia 65: | ||
'''Caution:''' Administrators can change limits of queues. You can check current limits by command <tt>qstat -Q -f <queue_name></tt> | '''Caution:''' Administrators can change limits of queues. You can check current limits by command <tt>qstat -Q -f <queue_name></tt> | ||
| − | == Description of | + | == Description of compute nodes properties == |
{| class="wikitable" style="text-align:center;" | {| class="wikitable" style="text-align:center;" | ||
| Linia 77: | Linia 77: | ||
| mhz2666 || processor speed | | mhz2666 || processor speed | ||
|- | |- | ||
| − | | mem16gb, mem24gb || ammount of RAM on | + | | mem16gb, mem24gb || ammount of RAM on compute server |
|- | |- | ||
| − | | core8, core12, core64 || number of cores on | + | | core8, core12, core64 || number of cores on compute server |
|- | |- | ||
| ib_ql || Inifniband network of Qlogic company | | ib_ql || Inifniband network of Qlogic company | ||
| Linia 85: | Linia 85: | ||
|ib_mlx || Infiniband network of Mellanox company | |ib_mlx || Infiniband network of Mellanox company | ||
|- | |- | ||
| − | |infiniband || | + | |infiniband || compute node with Infiniband network |
|} | |} | ||
| Linia 91: | Linia 91: | ||
== Rules on Zeus cluster == | == Rules on Zeus cluster == | ||
| − | * Using | + | * Using access machine for performing calculations is strictly prohibited. Administrators will interrupt such processes without warning. |
| − | * In case to compile the program, please use command <code>qsub -I -q l_interactive -l nodes=1:ppn=1</code><br/>This will log you on the | + | * In case to compile the program, please use command <code>qsub -I -q l_interactive -l nodes=1:ppn=1</code><br/>This will log you on the compute node, where you should perform program compilation. |
* If you want to perform computations it is essential to pass your grant ID using "-A" parameter while using <tt>qsub</tt> command or in PBS script. Detailed infrormation about grants can be found [[Grants|here]]. | * If you want to perform computations it is essential to pass your grant ID using "-A" parameter while using <tt>qsub</tt> command or in PBS script. Detailed infrormation about grants can be found [[Grants|here]]. | ||
Aktualna wersja na dzień 09:26, 19 sie 2014
Spis treści
Name of access machine
zeus.cyfronet.pl
or ui.cyfronet.pl (possible also combinations of Cyfronet domains: zeus.cyf-kr.edu.pl, zeus.cyfronet.krakow.pl)
Disk resources
| Location | Limit | Purpose | Type | Backup copy |
Possibility of intense write and/or read operations |
Notes |
|---|---|---|---|---|---|---|
| $HOME | 7GB | user's home directory | NFS | yes | no | |
| $STORAGE | 100GB | user's data storage | GPFS | no | no | |
| $SCRATCH | no limit | space for temporary files of tasks | Lustre | no | yes | data older than 30 days will be removed automatically |
| $PLG_GROUPS_SHARED/group_name or $PLG_GROUPS_STORAGE/group_name |
sum of grants | space for groups directories (PL-Grid) | Lustre | no | no |
Available software
Description of all available software is here.
Running jobs
Batch system: Torque
Resources manager: Moab
For purpose of running jobs the knowledge of basic commands of batch system is required.
Queues description
| Queue name | Maximum number of user jobs |
Maximum job duration |
Maximum number of cores per user |
Additional information |
|---|---|---|---|---|
| l_test | 3 | 15 minutes | 100 | queue for testing if job works properly |
| l_prio | 40 | 1 hour | 50 | queue dedicated for short jobs, that should compute quickly |
| l_short | 1000 | 3 hours | 2048 | |
| l_long | 500 | 72 hours | 2048 | |
| l_infinite | 30 | 90 days | 2048 | |
| l_exclusive | 700 | 2 weeks | 2048 | exclusive queue for parallel jobs with ppn=12 |
| l_bigmem | - | 1 week | 72 | access limited |
| l_interactive | 3 | 72 hours | 72 | queue for interactive jobs |
| plgrid-testing | 1 | 1 godzina | 12 | |
| plgrid | 700 | 72 godziny | 1024 | |
| plgrid-long | 1000 | 168 godzin | 1024 |
Caution: Administrators can change limits of queues. You can check current limits by command qstat -Q -f <queue_name>
Description of compute nodes properties
| Property | Description |
|---|---|
| E5645, X5650, opteron6276 | processor model |
| intel, amd | processor producer |
| mhz2666 | processor speed |
| mem16gb, mem24gb | ammount of RAM on compute server |
| core8, core12, core64 | number of cores on compute server |
| ib_ql | Inifniband network of Qlogic company |
| ib_mlx | Infiniband network of Mellanox company |
| infiniband | compute node with Infiniband network |
Rules on Zeus cluster
- Using access machine for performing calculations is strictly prohibited. Administrators will interrupt such processes without warning.
- In case to compile the program, please use command
qsub -I -q l_interactive -l nodes=1:ppn=1
This will log you on the compute node, where you should perform program compilation.
- If you want to perform computations it is essential to pass your grant ID using "-A" parameter while using qsub command or in PBS script. Detailed infrormation about grants can be found here.